Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
F1S1P4_PIGPC4 domain-containing protein. (120 aa)    
Predicted Functional Partners:
SYMPK
Symplekin.
    
 
 0.597
GTF2B
General transcription factor IIB.
   
 
 0.550
TMA7
Translation machinery associated 7 homolog.
   
  
 0.524
A0A5G2QGQ9_PIG
Uncharacterized protein.
   
  
 0.524
CNBP
CCHC-type zinc finger nucleic acid binding protein.
   
 
 0.518
SUPT5H
Transcription elongation factor SPT5.
    
 
 0.514
POMP
Proteasome maturation protein.
   
  
 0.474
POLR2C
DNA-directed RNA polymerase II subunit RPB3.
   
 
 0.468
UBL5
Ubiquitin-like protein 5.
   
    0.449
GTF3C1
General transcription factor 3C polypeptide 1 isoform 1.
    
 
 0.429
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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