UPF3B protein (Sus scrofa) - STRING interaction network

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UPF3B

UPF3B regulator of nonsense mediated mRNA decay. (483 aa)

Predicted Functional Partners:

UPF2

0.999

UPF1

0.987

RNPS1

0.982

MAGOHB

0.970

MAGOH

0.970

UPF3A

0.970

EIF4A3

0.961

LOC100153087

0.943

NXF1

0.943

SRRM1

0.941

Your Current Organism:

Sus scrofa

NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EIF4A3	LOC100153087	ENSSSCP00000018178	ENSSSCP00000013304	Eukaryotic initiation factor 4A-III, N-terminally processed; ATP-dependent RNA helicase. Involved in pre-mRNA splicing as component of the spliceosome. Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. The EJC is a dynamic structure consisting of core proteins and several peripheral nuclear and cytoplasmic associated factors that join the complex only transiently either during EJC assembly or during subsequent mRNA metabolism. The EJC marks the position of the exon-exon junction in the mature mRNA for the gene expr [...]	Uncharacterized protein.	0.929
EIF4A3	MAGOH	ENSSSCP00000018178	ENSSSCP00000004165	Eukaryotic initiation factor 4A-III, N-terminally processed; ATP-dependent RNA helicase. Involved in pre-mRNA splicing as component of the spliceosome. Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. The EJC is a dynamic structure consisting of core proteins and several peripheral nuclear and cytoplasmic associated factors that join the complex only transiently either during EJC assembly or during subsequent mRNA metabolism. The EJC marks the position of the exon-exon junction in the mature mRNA for the gene expr [...]	Mago homolog, exon junction complex subunit.	0.965
EIF4A3	MAGOHB	ENSSSCP00000018178	ENSSSCP00000000667	Eukaryotic initiation factor 4A-III, N-terminally processed; ATP-dependent RNA helicase. Involved in pre-mRNA splicing as component of the spliceosome. Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. The EJC is a dynamic structure consisting of core proteins and several peripheral nuclear and cytoplasmic associated factors that join the complex only transiently either during EJC assembly or during subsequent mRNA metabolism. The EJC marks the position of the exon-exon junction in the mature mRNA for the gene expr [...]	Mago homolog B, exon junction complex subunit.	0.953
EIF4A3	NXF1	ENSSSCP00000018178	ENSSSCP00000060958	Eukaryotic initiation factor 4A-III, N-terminally processed; ATP-dependent RNA helicase. Involved in pre-mRNA splicing as component of the spliceosome. Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. The EJC is a dynamic structure consisting of core proteins and several peripheral nuclear and cytoplasmic associated factors that join the complex only transiently either during EJC assembly or during subsequent mRNA metabolism. The EJC marks the position of the exon-exon junction in the mature mRNA for the gene expr [...]	Nuclear RNA export factor 1.	0.929
EIF4A3	RNPS1	ENSSSCP00000018178	ENSSSCP00000008596	Eukaryotic initiation factor 4A-III, N-terminally processed; ATP-dependent RNA helicase. Involved in pre-mRNA splicing as component of the spliceosome. Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. The EJC is a dynamic structure consisting of core proteins and several peripheral nuclear and cytoplasmic associated factors that join the complex only transiently either during EJC assembly or during subsequent mRNA metabolism. The EJC marks the position of the exon-exon junction in the mature mRNA for the gene expr [...]	RNA binding protein with serine rich domain 1.	0.993
EIF4A3	SRRM1	ENSSSCP00000018178	ENSSSCP00000047802	Eukaryotic initiation factor 4A-III, N-terminally processed; ATP-dependent RNA helicase. Involved in pre-mRNA splicing as component of the spliceosome. Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. The EJC is a dynamic structure consisting of core proteins and several peripheral nuclear and cytoplasmic associated factors that join the complex only transiently either during EJC assembly or during subsequent mRNA metabolism. The EJC marks the position of the exon-exon junction in the mature mRNA for the gene expr [...]	Serine and arginine repetitive matrix 1.	0.777
EIF4A3	UPF1	ENSSSCP00000018178	ENSSSCP00000036535	Eukaryotic initiation factor 4A-III, N-terminally processed; ATP-dependent RNA helicase. Involved in pre-mRNA splicing as component of the spliceosome. Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. The EJC is a dynamic structure consisting of core proteins and several peripheral nuclear and cytoplasmic associated factors that join the complex only transiently either during EJC assembly or during subsequent mRNA metabolism. The EJC marks the position of the exon-exon junction in the mature mRNA for the gene expr [...]	UPF1 RNA helicase and ATPase.	0.922
EIF4A3	UPF2	ENSSSCP00000018178	ENSSSCP00000027852	Eukaryotic initiation factor 4A-III, N-terminally processed; ATP-dependent RNA helicase. Involved in pre-mRNA splicing as component of the spliceosome. Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. The EJC is a dynamic structure consisting of core proteins and several peripheral nuclear and cytoplasmic associated factors that join the complex only transiently either during EJC assembly or during subsequent mRNA metabolism. The EJC marks the position of the exon-exon junction in the mature mRNA for the gene expr [...]	UPF2 regulator of nonsense mediated mRNA decay.	0.873
EIF4A3	UPF3A	ENSSSCP00000018178	ENSSSCP00000051568	Eukaryotic initiation factor 4A-III, N-terminally processed; ATP-dependent RNA helicase. Involved in pre-mRNA splicing as component of the spliceosome. Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. The EJC is a dynamic structure consisting of core proteins and several peripheral nuclear and cytoplasmic associated factors that join the complex only transiently either during EJC assembly or during subsequent mRNA metabolism. The EJC marks the position of the exon-exon junction in the mature mRNA for the gene expr [...]	UPF3A regulator of nonsense mediated mRNA decay.	0.882
EIF4A3	UPF3B	ENSSSCP00000018178	ENSSSCP00000013415	Eukaryotic initiation factor 4A-III, N-terminally processed; ATP-dependent RNA helicase. Involved in pre-mRNA splicing as component of the spliceosome. Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. The EJC is a dynamic structure consisting of core proteins and several peripheral nuclear and cytoplasmic associated factors that join the complex only transiently either during EJC assembly or during subsequent mRNA metabolism. The EJC marks the position of the exon-exon junction in the mature mRNA for the gene expr [...]	UPF3B regulator of nonsense mediated mRNA decay.	0.961
LOC100153087	EIF4A3	ENSSSCP00000013304	ENSSSCP00000018178	Uncharacterized protein.	Eukaryotic initiation factor 4A-III, N-terminally processed; ATP-dependent RNA helicase. Involved in pre-mRNA splicing as component of the spliceosome. Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. The EJC is a dynamic structure consisting of core proteins and several peripheral nuclear and cytoplasmic associated factors that join the complex only transiently either during EJC assembly or during subsequent mRNA metabolism. The EJC marks the position of the exon-exon junction in the mature mRNA for the gene expr [...]	0.929
LOC100153087	NXF1	ENSSSCP00000013304	ENSSSCP00000060958	Uncharacterized protein.	Nuclear RNA export factor 1.	0.902
LOC100153087	RNPS1	ENSSSCP00000013304	ENSSSCP00000008596	Uncharacterized protein.	RNA binding protein with serine rich domain 1.	0.573
LOC100153087	SRRM1	ENSSSCP00000013304	ENSSSCP00000047802	Uncharacterized protein.	Serine and arginine repetitive matrix 1.	0.518
LOC100153087	UPF1	ENSSSCP00000013304	ENSSSCP00000036535	Uncharacterized protein.	UPF1 RNA helicase and ATPase.	0.602
LOC100153087	UPF3A	ENSSSCP00000013304	ENSSSCP00000051568	Uncharacterized protein.	UPF3A regulator of nonsense mediated mRNA decay.	0.954
LOC100153087	UPF3B	ENSSSCP00000013304	ENSSSCP00000013415	Uncharacterized protein.	UPF3B regulator of nonsense mediated mRNA decay.	0.943
MAGOH	EIF4A3	ENSSSCP00000004165	ENSSSCP00000018178	Mago homolog, exon junction complex subunit.	Eukaryotic initiation factor 4A-III, N-terminally processed; ATP-dependent RNA helicase. Involved in pre-mRNA splicing as component of the spliceosome. Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. The EJC is a dynamic structure consisting of core proteins and several peripheral nuclear and cytoplasmic associated factors that join the complex only transiently either during EJC assembly or during subsequent mRNA metabolism. The EJC marks the position of the exon-exon junction in the mature mRNA for the gene expr [...]	0.965
MAGOH	MAGOHB	ENSSSCP00000004165	ENSSSCP00000000667	Mago homolog, exon junction complex subunit.	Mago homolog B, exon junction complex subunit.	0.900
MAGOH	RNPS1	ENSSSCP00000004165	ENSSSCP00000008596	Mago homolog, exon junction complex subunit.	RNA binding protein with serine rich domain 1.	0.793