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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACTRT1Actin related protein T1; Belongs to the actin family. (377 aa)    
Predicted Functional Partners:
PRR13
Proline rich 13.
   
 
 0.896
DOT1L
Histone-lysine N-methyltransferase, H3 lysine-79 specific.
   
 
 0.675
SPATC1L
Spermatogenesis and centriole associated 1 like.
   
  
 0.617
MYSM1
Myb like, SWIRM and MPN domains 1.
   
 
 0.590
MLC1
Modulator of VRAC current 1.
      
 0.585
SYCP3
Synaptonemal complex protein 3.
    
 
 0.560
TSGA10
Testis specific 10.
   
 
 0.546
KMT2D
Uncharacterized protein.
      
 0.538
CENPA
Centromere protein A.
  
 
 0.538
ACTL6A
Actin-like protein 6A isoform X1; Belongs to the actin family.
    
 
0.516
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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