Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
TMLHETrimethyllysine dioxygenase, mitochondrial isoform 1. (421 aa)    
Predicted Functional Partners:
BBOX1
Gamma-butyrobetaine hydroxylase 1.
  
 
0.789
AIFM2
Apoptosis inducing factor mitochondria associated 2.
      
 0.787
CDKAL1
CDK5 regulatory subunit associated protein 1 like 1.
      
 0.785
SPRY3
Sprouty RTK signaling antagonist 3.
      
 0.765
CHCHD4
Mitochondrial intermembrane space import and assembly protein 40 isoform 1.
      
 0.720
ALDH9A1
4-trimethylaminobutyraldehyde dehydrogenase; Converts gamma-trimethylaminobutyraldehyde into gamma- butyrobetaine with high efficiency (in vitro). Can catalyze the irreversible oxidation of a broad range of aldehydes to the corresponding acids in an NAD-dependent reaction, but with low efficiency.
   
 0.719
ALDH7A1
Aldehyde dehydrogenase 7 family member A1; Belongs to the aldehyde dehydrogenase family.
   
 0.703
TRAT1
T cell receptor associated transmembrane adaptor 1.
      
 0.666
APBB1IP
Amyloid beta precursor protein binding family B member 1 interacting protein.
      
 0.647
FBXL20
F-box and leucine rich repeat protein 20.
      
 0.643
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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