STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DEAF1Deformed epidermal autoregulatory factor 1 homolog isoform X1. (565 aa)    
Predicted Functional Partners:
NFX1
Nuclear transcription factor, X-box binding 1.
      
 0.729
HELZ
Putative helicase with zinc finger domain isoform X1.
      
 0.574
OSR1
Odd-skipped related transcription factor 1.
    
 
 0.528
TAPT1
Transmembrane anterior posterior transformation 1.
      
 0.523
SMYD1
SET and MYND domain containing 1.
   
 
 0.517
LRRC6
Leucine rich repeat containing 6.
      
 0.516
ZMYND10
Zinc finger MYND domain-containing protein 10; Plays a role in axonemal structure organization and motility. Involved in axonemal pre-assembly of inner and outer dynein arms (IDA and ODA, respectively) for proper axoneme building for cilia motility. May act by indirectly regulating transcription of dynein proteins. Belongs to the ZMYND10 family.
      
 0.516
LITAF
Lipopolysaccharide-induced tumor necrosis factor-alpha factor isoform X1.
      
 0.509
MAP3K2
Mitogen-activated protein kinase kinase kinase 2.
      
 0.508
AGMO
Alkylglycerol monooxygenase; Belongs to the sterol desaturase family.
    
 
 0.507
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.