Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LTO1Oral cancer-overexpressed protein 1. (137 aa)    
Predicted Functional Partners:
YAE1
YAE1 maturation factor of ABCE1.
   
 
 0.966
ABCE1
ATP binding cassette subfamily E member 1.
    
 
 0.862
FGF19
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
      
 0.790
ZNF784
Zinc finger protein 784.
    
   0.770
MMS19
MMS19 homolog, cytosolic iron-sulfur assembly component.
    
 
 0.740
BEND6
BEN domain-containing protein 6 isoform X1.
    
   0.690
FGF3
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
      
 0.677
FGF4
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
      
 0.663
STX17
Syntaxin-17 isoform X1; Belongs to the syntaxin family.
      
 0.652
SOX5
SRY-box transcription factor 5.
      
 0.609
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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