CPT1A protein (Sus scrofa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CPT1A

Uncharacterized protein; Belongs to the carnitine/choline acetyltransferase family. (771 aa)

Predicted Functional Partners:

ACSL1

0.954

ACSL3

0.950

CPT2

0.948

ACACB

0.946

ACSL4

0.934

ACSL5

0.932

CPT1C

0.919

ACSBG2

0.919

CPT1B

0.919

ACACA

0.910

Your Current Organism:

Sus scrofa

NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACACA	ACACB	ENSSSCP00000047454	ENSSSCP00000067823	Acetyl-CoA carboxylase alpha.	Biotin carboxylation domain-containing protein.	0.919
ACACA	ACSL1	ENSSSCP00000047454	ENSSSCP00000043771	Acetyl-CoA carboxylase alpha.	Acyl-CoA synthetase long chain family member 1.	0.832
ACACA	ACSL3	ENSSSCP00000047454	ENSSSCP00000052719	Acetyl-CoA carboxylase alpha.	Acyl-CoA synthetase long chain family member 3.	0.644
ACACA	ACSL4	ENSSSCP00000047454	ENSSSCP00000056573	Acetyl-CoA carboxylase alpha.	Acyl-CoA synthetase long chain family member 4.	0.606
ACACA	ACSL5	ENSSSCP00000047454	ENSSSCP00000021791	Acetyl-CoA carboxylase alpha.	Acyl-CoA synthetase long chain family member 5.	0.490
ACACA	CPT1A	ENSSSCP00000047454	ENSSSCP00000013693	Acetyl-CoA carboxylase alpha.	Uncharacterized protein; Belongs to the carnitine/choline acetyltransferase family.	0.910
ACACA	CPT1B	ENSSSCP00000047454	ENSSSCP00000044392	Acetyl-CoA carboxylase alpha.	Carnitine O-palmitoyltransferase 1, muscle isoform.	0.865
ACACA	CPT1C	ENSSSCP00000047454	ENSSSCP00000042138	Acetyl-CoA carboxylase alpha.	Carnitine palmitoyltransferase 1C; Belongs to the carnitine/choline acetyltransferase family.	0.732
ACACA	CPT2	ENSSSCP00000047454	ENSSSCP00000070352	Acetyl-CoA carboxylase alpha.	Carn_acyltransf domain-containing protein; Belongs to the carnitine/choline acetyltransferase family.	0.449
ACACB	ACACA	ENSSSCP00000067823	ENSSSCP00000047454	Biotin carboxylation domain-containing protein.	Acetyl-CoA carboxylase alpha.	0.919
ACACB	ACSL1	ENSSSCP00000067823	ENSSSCP00000043771	Biotin carboxylation domain-containing protein.	Acyl-CoA synthetase long chain family member 1.	0.696
ACACB	ACSL3	ENSSSCP00000067823	ENSSSCP00000052719	Biotin carboxylation domain-containing protein.	Acyl-CoA synthetase long chain family member 3.	0.575
ACACB	ACSL4	ENSSSCP00000067823	ENSSSCP00000056573	Biotin carboxylation domain-containing protein.	Acyl-CoA synthetase long chain family member 4.	0.551
ACACB	CPT1A	ENSSSCP00000067823	ENSSSCP00000013693	Biotin carboxylation domain-containing protein.	Uncharacterized protein; Belongs to the carnitine/choline acetyltransferase family.	0.946
ACACB	CPT1B	ENSSSCP00000067823	ENSSSCP00000044392	Biotin carboxylation domain-containing protein.	Carnitine O-palmitoyltransferase 1, muscle isoform.	0.948
ACACB	CPT1C	ENSSSCP00000067823	ENSSSCP00000042138	Biotin carboxylation domain-containing protein.	Carnitine palmitoyltransferase 1C; Belongs to the carnitine/choline acetyltransferase family.	0.929
ACSBG2	ACSL1	ENSSSCP00000044003	ENSSSCP00000043771	Acyl-CoA synthetase bubblegum family member 2.	Acyl-CoA synthetase long chain family member 1.	0.909
ACSBG2	ACSL3	ENSSSCP00000044003	ENSSSCP00000052719	Acyl-CoA synthetase bubblegum family member 2.	Acyl-CoA synthetase long chain family member 3.	0.931
ACSBG2	ACSL4	ENSSSCP00000044003	ENSSSCP00000056573	Acyl-CoA synthetase bubblegum family member 2.	Acyl-CoA synthetase long chain family member 4.	0.934
ACSBG2	ACSL5	ENSSSCP00000044003	ENSSSCP00000021791	Acyl-CoA synthetase bubblegum family member 2.	Acyl-CoA synthetase long chain family member 5.	0.905