STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F1SCL3_PIGUncharacterized protein. (376 aa)    
Predicted Functional Partners:
EWSR1
EWS RNA binding protein 1.
   
 
 0.661
SRSF1
Serine/arginine-rich splicing factor 1; Plays a role in preventing exon skipping, ensuring the accuracy of splicing and regulating alternative splicing. Interacts with other spliceosomal components, via the RS domains, to form a bridge between the 5'- and 3'-splice site binding components, U1 snRNP and U2AF. Can stimulate binding of U1 snRNP to a 5'-splice site- containing pre-mRNA. Binds to purine-rich RNA sequences, either the octamer, 5'-RGAAGAAC-3' (r=A or G) or the decamers, AGGACAGAGC/AGGACGAAGC. Binds preferentially to the 5'-CGAGGCG-3' motif in vitro. Three copies of the octame [...]
  
 
 0.648
HNRNPM
Heterogeneous nuclear ribonucleoprotein M.
   
 
 0.642
SRSF3
Serine and arginine rich splicing factor 3.
   
 
 0.640
TRA2B
Transformer 2 beta homolog.
  
 
 0.628
SSB
Small RNA binding exonuclease protection factor La.
   
 
 0.617
HNRNPL
Heterogeneous nuclear ribonucleoprotein L.
   
 
 0.614
SF3B1
Splicing factor 3B subunit 1 isoform 1.
   
 
 0.604
HNRNPC
Heterogeneous nuclear ribonucleoproteins C1/C2 isoform X1.
   
 
 0.603
ALYREF
Aly/REF export factor.
  
 
 0.603
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.