Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MRPL4Mitochondrial ribosomal protein L4. (310 aa)    
Predicted Functional Partners:
MRPL3
Mitochondrial ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.
  
 
 0.994
MRPL15
Mitochondrial ribosomal protein L15.
  
 
 0.992
MRPL20
39S ribosomal protein L20, mitochondrial isoform 1; Belongs to the bacterial ribosomal protein bL20 family.
   
 
 0.991
MRPL17
Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.
  
 
 0.990
MRPL13
39S ribosomal protein L13, mitochondrial; Belongs to the universal ribosomal protein uL13 family.
  
 
 0.988
MRPL49
Mitochondrial ribosomal protein L49.
   
 
 0.988
MRPL2
Mitochondrial ribosomal protein L2.
  
 
 0.988
MRPS9
28S ribosomal protein S9, mitochondrial; Belongs to the universal ribosomal protein uS9 family.
  
 
 0.987
MRPL33
Mitochondrial ribosomal protein L33.
  
 
 0.986
MRPL12
Mitochondrial ribosomal protein L12.
  
 
 0.986
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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