Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FAM32AUncharacterized protein. (112 aa)    
Predicted Functional Partners:
SLU7
Pre-mRNA-splicing factor SLU7 isoform X1.
   
 0.943
CWC22
CWC22 spliceosome associated protein homolog.
    
  0.942
CCDC90B
Coiled-coil domain-containing protein 90B, mitochondrial isoform 1.
   
  
 0.932
SYF2
SYF2 pre-mRNA splicing factor.
   
 0.921
CACTIN
Cactin, spliceosome C complex subunit.
    
 0.920
CCDC12
Coiled-coil domain containing 12.
   
 0.895
DDX41
DEAD-box helicase 41.
    
 0.890
PRKRIP1
PRKR interacting protein 1.
     
 0.888
NKAP
NFKB activating protein.
    
 0.887
CDC40
Pre-mRNA-processing factor 17.
    
 0.886
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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