STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PDLIM4PDZ and LIM domain protein 4 isoform 1. (331 aa)    
Predicted Functional Partners:
PRSS23
Serine protease 23.
   
  
 0.776
ACER1
Alkaline ceramidase; Hydrolyzes the sphingolipid ceramide into sphingosine and free fatty acid.
   
  
 0.727
GPR101
Putative G-protein coupled receptor 101; Belongs to the G-protein coupled receptor 1 family.
      
 0.726
EHBP1
EH domain binding protein 1.
   
 0.642
EHBP1L1
EH domain binding protein 1 like 1.
   
 0.642
PDLIM5
PDZ and LIM domain 5.
     
0.625
IQSEC2
IQ motif and Sec7 domain 2.
      
 0.608
PDLIM2
Uncharacterized protein.
     
0.603
PDLIM3
PDZ and LIM domain protein 3; May play a role in the organization of actin filament arrays within muscle cells.
  
  
0.601
LIMD1
LIM domain-containing protein 1.
   
 
 0.575
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.