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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPATA24Spermatogenesis-associated protein 24. (205 aa)    
Predicted Functional Partners:
DNAJC18
DnaJ heat shock protein family (Hsp40) member C18.
      
 0.784
TMEM266
Transmembrane protein 266.
      
 0.687
ETF1
Eukaryotic peptide chain release factor subunit 1 isoform 1.
      
 0.670
YEATS4
YEATS domain containing 4.
      
 0.663
PKD2L2
Polycystin 2 like 2, transient receptor potential cation channel.
      
 0.654
FAM13B
Family with sequence similarity 13 member B.
      
 0.652
SMNDC1
Survival motor neuron domain containing 1.
      
 0.650
SYNCRIP
Synaptotagmin binding cytoplasmic RNA interacting protein.
      
 0.646
LRRTM2
Leucine-rich repeat transmembrane neuronal protein 2.
      
 0.637
MZB1
Marginal zone B-and B1-cell-specific protein.
  
   
 0.626
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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