STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDX1Caudal type homeobox 1. (311 aa)    
Predicted Functional Partners:
CDH17
Cadherin-17.
   
  
 0.670
EPC2
Enhancer of polycomb homolog.
      
 0.577
REG4
Regenerating islet derived family member 4 variant 2.
   
  
 0.565
RASGEF1C
RasGEF domain family member 1C.
      
 0.541
TFF3
Trefoil factor 3; Involved in the maintenance and repair of the intestinal mucosa. Promotes the mobility of epithelial cells in healing processes (motogen) (By similarity).
      
 0.537
GLIS2
GLIS family zinc finger 2.
    
 
 0.531
LEF1
Lymphoid enhancer binding factor 1.
    
 
 0.531
AXIN2
Axin-2.
      
 0.526
TFG
Trafficking from ER to golgi regulator.
    
 
 0.523
MS4A12
Membrane spanning 4-domains A12.
      
 0.514
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.