ZNF215 protein (Sus scrofa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ZNF215

Uncharacterized protein. (331 aa)

Predicted Functional Partners:

TSPAN32

0.875

LRRIQ3

0.825

CTU1

0.774

SYT3

0.760

SCAND1

0.742

RASGRF1

0.717

INTS4

0.704

MYH14

0.680

KCNC3

0.675

BAZ2B

0.646

Your Current Organism:

Sus scrofa

NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BAZ2B	INTS4	ENSSSCP00000016830	ENSSSCP00000015804	Bromodomain adjacent to zinc finger domain 2B.	Uncharacterized protein.	0.901
BAZ2B	ZNF215	ENSSSCP00000016830	ENSSSCP00000015530	Bromodomain adjacent to zinc finger domain 2B.	Uncharacterized protein.	0.646
CTU1	INTS4	ENSSSCP00000050610	ENSSSCP00000015804	Cytoplasmic tRNA 2-thiolation protein 1; Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Directly binds tRNAs and probably acts by catalyzing adenylation of tRNAs, an intermediate required for 2-thiolation. It is unclear whether it acts as a sulfurtransferase that transfers sulfur from thiocarboxylated URM1 onto the uridine of tRNAs at wobble position; Belongs to the TtcA family. CTU1/NCS6/ATPBD3 subfamily.	Uncharacterized protein.	0.767
CTU1	KCNC3	ENSSSCP00000050610	ENSSSCP00000069267	Cytoplasmic tRNA 2-thiolation protein 1; Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Directly binds tRNAs and probably acts by catalyzing adenylation of tRNAs, an intermediate required for 2-thiolation. It is unclear whether it acts as a sulfurtransferase that transfers sulfur from thiocarboxylated URM1 onto the uridine of tRNAs at wobble position; Belongs to the TtcA family. CTU1/NCS6/ATPBD3 subfamily.	Potassium voltage-gated channel subfamily C member 3; Belongs to the potassium channel family.	0.703
CTU1	LRRIQ3	ENSSSCP00000050610	ENSSSCP00000062163	Cytoplasmic tRNA 2-thiolation protein 1; Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Directly binds tRNAs and probably acts by catalyzing adenylation of tRNAs, an intermediate required for 2-thiolation. It is unclear whether it acts as a sulfurtransferase that transfers sulfur from thiocarboxylated URM1 onto the uridine of tRNAs at wobble position; Belongs to the TtcA family. CTU1/NCS6/ATPBD3 subfamily.	Leucine rich repeats and IQ motif containing 3.	0.828
CTU1	MYH14	ENSSSCP00000050610	ENSSSCP00000023848	Cytoplasmic tRNA 2-thiolation protein 1; Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Directly binds tRNAs and probably acts by catalyzing adenylation of tRNAs, an intermediate required for 2-thiolation. It is unclear whether it acts as a sulfurtransferase that transfers sulfur from thiocarboxylated URM1 onto the uridine of tRNAs at wobble position; Belongs to the TtcA family. CTU1/NCS6/ATPBD3 subfamily.	Myosin heavy chain 14; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.702
CTU1	SYT3	ENSSSCP00000050610	ENSSSCP00000003498	Cytoplasmic tRNA 2-thiolation protein 1; Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Directly binds tRNAs and probably acts by catalyzing adenylation of tRNAs, an intermediate required for 2-thiolation. It is unclear whether it acts as a sulfurtransferase that transfers sulfur from thiocarboxylated URM1 onto the uridine of tRNAs at wobble position; Belongs to the TtcA family. CTU1/NCS6/ATPBD3 subfamily.	Synaptotagmin-3 isoform X1.	0.794
CTU1	ZNF215	ENSSSCP00000050610	ENSSSCP00000015530	Cytoplasmic tRNA 2-thiolation protein 1; Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Directly binds tRNAs and probably acts by catalyzing adenylation of tRNAs, an intermediate required for 2-thiolation. It is unclear whether it acts as a sulfurtransferase that transfers sulfur from thiocarboxylated URM1 onto the uridine of tRNAs at wobble position; Belongs to the TtcA family. CTU1/NCS6/ATPBD3 subfamily.	Uncharacterized protein.	0.774
INTS4	BAZ2B	ENSSSCP00000015804	ENSSSCP00000016830	Uncharacterized protein.	Bromodomain adjacent to zinc finger domain 2B.	0.901
INTS4	CTU1	ENSSSCP00000015804	ENSSSCP00000050610	Uncharacterized protein.	Cytoplasmic tRNA 2-thiolation protein 1; Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Directly binds tRNAs and probably acts by catalyzing adenylation of tRNAs, an intermediate required for 2-thiolation. It is unclear whether it acts as a sulfurtransferase that transfers sulfur from thiocarboxylated URM1 onto the uridine of tRNAs at wobble position; Belongs to the TtcA family. CTU1/NCS6/ATPBD3 subfamily.	0.767
INTS4	KCNC3	ENSSSCP00000015804	ENSSSCP00000069267	Uncharacterized protein.	Potassium voltage-gated channel subfamily C member 3; Belongs to the potassium channel family.	0.670
INTS4	LRRIQ3	ENSSSCP00000015804	ENSSSCP00000062163	Uncharacterized protein.	Leucine rich repeats and IQ motif containing 3.	0.820
INTS4	MYH14	ENSSSCP00000015804	ENSSSCP00000023848	Uncharacterized protein.	Myosin heavy chain 14; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.680
INTS4	SYT3	ENSSSCP00000015804	ENSSSCP00000003498	Uncharacterized protein.	Synaptotagmin-3 isoform X1.	0.732
INTS4	ZNF215	ENSSSCP00000015804	ENSSSCP00000015530	Uncharacterized protein.	Uncharacterized protein.	0.704
KCNC3	CTU1	ENSSSCP00000069267	ENSSSCP00000050610	Potassium voltage-gated channel subfamily C member 3; Belongs to the potassium channel family.	Cytoplasmic tRNA 2-thiolation protein 1; Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Directly binds tRNAs and probably acts by catalyzing adenylation of tRNAs, an intermediate required for 2-thiolation. It is unclear whether it acts as a sulfurtransferase that transfers sulfur from thiocarboxylated URM1 onto the uridine of tRNAs at wobble position; Belongs to the TtcA family. CTU1/NCS6/ATPBD3 subfamily.	0.703
KCNC3	INTS4	ENSSSCP00000069267	ENSSSCP00000015804	Potassium voltage-gated channel subfamily C member 3; Belongs to the potassium channel family.	Uncharacterized protein.	0.670
KCNC3	LRRIQ3	ENSSSCP00000069267	ENSSSCP00000062163	Potassium voltage-gated channel subfamily C member 3; Belongs to the potassium channel family.	Leucine rich repeats and IQ motif containing 3.	0.762
KCNC3	MYH14	ENSSSCP00000069267	ENSSSCP00000023848	Potassium voltage-gated channel subfamily C member 3; Belongs to the potassium channel family.	Myosin heavy chain 14; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.622
KCNC3	SYT3	ENSSSCP00000069267	ENSSSCP00000003498	Potassium voltage-gated channel subfamily C member 3; Belongs to the potassium channel family.	Synaptotagmin-3 isoform X1.	0.706