STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
USP35Ubiquitin specific peptidase 35; Belongs to the peptidase C19 family. (1005 aa)    
Predicted Functional Partners:
USP30
Ubiquitin carboxyl-terminal hydrolase; Deubiquitinating enzyme that removes conjugated ubiquitin from specific proteins to regulate different cellular processes. Belongs to the peptidase C19 family.
      
 0.936
WDR48
WD repeat domain 48.
   
 
 0.687
MARCHF5
Membrane associated ring-CH-type finger 5.
      
 0.662
PEX16
Peroxisomal membrane protein PEX16.
      
 0.650
PARL
Rhomboid domain-containing protein.
      
 0.619
USP8
Ubiquitin specific peptidase 8; Belongs to the peptidase C19 family.
   
  
0.595
WDR20
WD repeat domain 20.
   
 
 0.575
DMWD
DM1 locus, WD repeat containing.
   
 
 0.575
FKBP8
Peptidylprolyl isomerase.
      
 0.572
BCL2L13
BCL2 like 13.
      
 0.572
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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