Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MMP27Matrix metallopeptidase 27. (511 aa)    
Predicted Functional Partners:
SLC35F1
Solute carrier family 35 member F1.
   
  
 0.708
ATP8B3
Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.
    
 
 0.680
TIMP3
TIMP metallopeptidase inhibitor 3.
   
 0.634
SLC4A9
Anion exchange protein.
      
 0.623
TIMP2
Uncharacterized protein.
    
 0.623
TIMP4
TIMP metallopeptidase inhibitor 4.
    
 0.602
PCOLCE
Procollagen C-endopeptidase enhancer 1.
      
 0.599
ATP13A3
Cation-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type V subfamily.
    
 
 0.586
MMP9
Matrix metalloproteinase-9.
   
 0.557
SLC16A2
Solute carrier family 16 member 2.
      
 0.551
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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