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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C11orf88Chromosome 11 open reading frame 88. (168 aa)    
Predicted Functional Partners:
GTF2B
General transcription factor IIB.
   
 
 0.751
TAF10
Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.
    
 
 0.733
TAF1
Transcription initiation factor TFIID subunit.
    
 
 0.733
TAF2
TATA-box binding protein associated factor 2.
    
 
 0.733
BTAF1
B-TFIID TATA-box binding protein associated factor 1.
    
 
 0.733
TAF12
Transcription initiation factor TFIID subunit 12 isoform X1.
    
 
 0.733
BDP1
B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.
    
 
 0.724
DRAP1
DR1 associated protein 1.
    
 
 0.722
TAF8
TATA-box binding protein associated factor 8.
    
 
 0.714
DR1
Down-regulator of transcription 1.
    
 
 0.703
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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