Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C11orf88Chromosome 11 open reading frame 88. (168 aa)    
Predicted Functional Partners:
GTF2B
General transcription factor IIB.
   
 0.760
FDFT1
Farnesyl-diphosphate farnesyltransferase 1.
   
    0.660
TAF1
Transcription initiation factor TFIID subunit.
    
 
 0.650
TAF2
TATA-box binding protein associated factor 2.
    
 
 0.650
BTAF1
B-TFIID TATA-box binding protein associated factor 1.
    
 
 0.650
TAF12
Transcription initiation factor TFIID subunit 12 isoform X1.
    
 
 0.650
TAF10
Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.
    
 
 0.649
EDF1
Endothelial differentiation related factor 1.
    
 
 0.637
DRAP1
DR1 associated protein 1.
    
 
 0.636
GTF2F1
Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.
    
 
 0.635
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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