PATE3 protein (Sus scrofa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

PATE3

Prostate and testis expressed 3. (98 aa)

Predicted Functional Partners:

PATE1

0.975

PATE2

0.951

A0A286ZRQ7_PIG

0.920

A0A287B2B2_PIG

0.902

LYPD6B

0.892

LYNX1

0.892

A0A5G2R6Q7_PIG

0.888

CHRNA7

0.870

CHRNA2

0.868

CHRNA1

0.868

Your Current Organism:

Sus scrofa

NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A286ZRQ7_PIG	A0A287B2B2_PIG	ENSSSCP00000032383	ENSSSCP00000050541	Uncharacterized protein.	Uncharacterized protein.	0.426
A0A286ZRQ7_PIG	A0A5G2R6Q7_PIG	ENSSSCP00000032383	ENSSSCP00000066280	Uncharacterized protein.	Uncharacterized protein.	0.879
A0A286ZRQ7_PIG	CHRNA1	ENSSSCP00000032383	ENSSSCP00000016922	Uncharacterized protein.	Cholinergic receptor nicotinic alpha 1 subunit.	0.867
A0A286ZRQ7_PIG	CHRNA2	ENSSSCP00000032383	ENSSSCP00000010321	Uncharacterized protein.	Cholinergic receptor nicotinic alpha 2 subunit.	0.867
A0A286ZRQ7_PIG	CHRNA7	ENSSSCP00000032383	ENSSSCP00000069248	Uncharacterized protein.	Uncharacterized protein.	0.851
A0A286ZRQ7_PIG	LYNX1	ENSSSCP00000032383	ENSSSCP00000050110	Uncharacterized protein.	Ly6/neurotoxin 1.	0.883
A0A286ZRQ7_PIG	LYPD6B	ENSSSCP00000032383	ENSSSCP00000016620	Uncharacterized protein.	LY6/PLAUR domain containing 6B.	0.868
A0A286ZRQ7_PIG	PATE1	ENSSSCP00000032383	ENSSSCP00000031146	Uncharacterized protein.	Prostate and testis expressed 1.	0.919
A0A286ZRQ7_PIG	PATE2	ENSSSCP00000032383	ENSSSCP00000040125	Uncharacterized protein.	Prostate and testis expressed protein 2.	0.905
A0A286ZRQ7_PIG	PATE3	ENSSSCP00000032383	ENSSSCP00000016142	Uncharacterized protein.	Prostate and testis expressed 3.	0.920
A0A287B2B2_PIG	A0A286ZRQ7_PIG	ENSSSCP00000050541	ENSSSCP00000032383	Uncharacterized protein.	Uncharacterized protein.	0.426
A0A287B2B2_PIG	A0A5G2R6Q7_PIG	ENSSSCP00000050541	ENSSSCP00000066280	Uncharacterized protein.	Uncharacterized protein.	0.804
A0A287B2B2_PIG	CHRNA1	ENSSSCP00000050541	ENSSSCP00000016922	Uncharacterized protein.	Cholinergic receptor nicotinic alpha 1 subunit.	0.508
A0A287B2B2_PIG	CHRNA2	ENSSSCP00000050541	ENSSSCP00000010321	Uncharacterized protein.	Cholinergic receptor nicotinic alpha 2 subunit.	0.508
A0A287B2B2_PIG	CHRNA7	ENSSSCP00000050541	ENSSSCP00000069248	Uncharacterized protein.	Uncharacterized protein.	0.508
A0A287B2B2_PIG	LYNX1	ENSSSCP00000050541	ENSSSCP00000050110	Uncharacterized protein.	Ly6/neurotoxin 1.	0.641
A0A287B2B2_PIG	LYPD6B	ENSSSCP00000050541	ENSSSCP00000016620	Uncharacterized protein.	LY6/PLAUR domain containing 6B.	0.791
A0A287B2B2_PIG	PATE1	ENSSSCP00000050541	ENSSSCP00000031146	Uncharacterized protein.	Prostate and testis expressed 1.	0.717
A0A287B2B2_PIG	PATE2	ENSSSCP00000050541	ENSSSCP00000040125	Uncharacterized protein.	Prostate and testis expressed protein 2.	0.884
A0A287B2B2_PIG	PATE3	ENSSSCP00000050541	ENSSSCP00000016142	Uncharacterized protein.	Prostate and testis expressed 3.	0.902