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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPUSD4RNA pseudouridylate synthase domain-containing protein 4. (376 aa)    
Predicted Functional Partners:
MRM3
Mitochondrial rRNA methyltransferase 3.
  
 
 0.900
FASTKD2
FAST kinase domain-containing protein 2, mitochondrial.
   
 
 0.882
MALSU1
Mitochondrial assembly of ribosomal large subunit 1.
  
 
 0.874
TRUB2
Mitochondrial mRNA pseudouridine synthase TRUB2 isoform 1.
  
 
 0.853
PUS7L
Pseudouridine synthase 7 like.
    
 
 0.830
MRM2
FtsJ domain-containing protein.
   
 
 0.818
MRPL47
Mitochondrial ribosomal protein L47.
    
 
 0.797
MTG1
Mitochondrial ribosome associated GTPase 1.
  
 
 0.794
PUS7
Pseudouridine synthase 7.
    
 
 0.793
PUS3
tRNA pseudouridine(38/39) synthase isoform 1.
 
  
 0.783
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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