STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAB3GAP1RAB3 GTPase activating protein catalytic subunit 1. (758 aa)    
Predicted Functional Partners:
RAB3GAP2
RAB3 GTPase activating non-catalytic protein subunit 2.
   
 0.998
TBC1D20
TBC1 domain family member 20 isoform X1.
      
 0.814
DMXL2
Dmx like 2.
   
 
 0.764
GDI1
Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.
     
 0.730
RAB18
RAB18, member RAS oncogene family.
    
 0.717
WDR7
WD repeat domain 7.
    
 
 0.687
VAPB
Vesicle-associated membrane protein-associated protein B; Participates in the endoplasmic reticulum unfolded protein response (UPR) by inducing ERN1/IRE1 activity. Involved in cellular calcium homeostasis regulation.
    
 
 0.676
PPEF2
Serine/threonine-protein phosphatase with EF-hands.
      
 0.671
DMXL1
Dmx like 1.
   
 
 0.670
SLC38A6
Solute carrier family 38 member 6.
   
    0.664
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
Server load: low (28%) [HD]