NIFK protein (Sus scrofa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

NIFK

Nucleolar protein interacting with the FHA domain of MKI67. (294 aa)

Predicted Functional Partners:

RSL1D1

0.992

RRS1

0.991

RPF2

0.989

NOC2L

0.986

EBNA1BP2

0.985

NIP7

0.983

PUM3

0.981

NOP58

0.981

RPF1

0.981

MAK16

0.981

Your Current Organism:

Sus scrofa

NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EBNA1BP2	MAK16	ENSSSCP00000019639	ENSSSCP00000047933	EBNA1 binding protein 2.	Protein MAK16 homolog; Belongs to the MAK16 family.	0.998
EBNA1BP2	NIFK	ENSSSCP00000019639	ENSSSCP00000016670	EBNA1 binding protein 2.	Nucleolar protein interacting with the FHA domain of MKI67.	0.985
EBNA1BP2	NIP7	ENSSSCP00000019639	ENSSSCP00000067928	EBNA1 binding protein 2.	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 34S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.	0.998
EBNA1BP2	NOC2L	ENSSSCP00000019639	ENSSSCP00000023786	EBNA1 binding protein 2.	NOC2 like nucleolar associated transcriptional repressor.	0.980
EBNA1BP2	NOP58	ENSSSCP00000019639	ENSSSCP00000022063	EBNA1 binding protein 2.	NOP58 ribonucleoprotein.	0.973
EBNA1BP2	PUM3	ENSSSCP00000019639	ENSSSCP00000005619	EBNA1 binding protein 2.	Pumilio RNA binding family member 3.	0.988
EBNA1BP2	RPF1	ENSSSCP00000019639	ENSSSCP00000025516	EBNA1 binding protein 2.	Ribosome production factor 1 homolog.	0.997
EBNA1BP2	RPF2	ENSSSCP00000019639	ENSSSCP00000069681	EBNA1 binding protein 2.	Ribosome production factor 2 homolog.	0.987
EBNA1BP2	RRS1	ENSSSCP00000019639	ENSSSCP00000006625	EBNA1 binding protein 2.	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	0.998
EBNA1BP2	RSL1D1	ENSSSCP00000019639	ENSSSCP00000061526	EBNA1 binding protein 2.	Ribosomal L1 domain-containing protein 1.	0.981
MAK16	EBNA1BP2	ENSSSCP00000047933	ENSSSCP00000019639	Protein MAK16 homolog; Belongs to the MAK16 family.	EBNA1 binding protein 2.	0.998
MAK16	NIFK	ENSSSCP00000047933	ENSSSCP00000016670	Protein MAK16 homolog; Belongs to the MAK16 family.	Nucleolar protein interacting with the FHA domain of MKI67.	0.981
MAK16	NIP7	ENSSSCP00000047933	ENSSSCP00000067928	Protein MAK16 homolog; Belongs to the MAK16 family.	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 34S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.	0.996
MAK16	NOC2L	ENSSSCP00000047933	ENSSSCP00000023786	Protein MAK16 homolog; Belongs to the MAK16 family.	NOC2 like nucleolar associated transcriptional repressor.	0.948
MAK16	NOP58	ENSSSCP00000047933	ENSSSCP00000022063	Protein MAK16 homolog; Belongs to the MAK16 family.	NOP58 ribonucleoprotein.	0.870
MAK16	PUM3	ENSSSCP00000047933	ENSSSCP00000005619	Protein MAK16 homolog; Belongs to the MAK16 family.	Pumilio RNA binding family member 3.	0.969
MAK16	RPF1	ENSSSCP00000047933	ENSSSCP00000025516	Protein MAK16 homolog; Belongs to the MAK16 family.	Ribosome production factor 1 homolog.	0.997
MAK16	RPF2	ENSSSCP00000047933	ENSSSCP00000069681	Protein MAK16 homolog; Belongs to the MAK16 family.	Ribosome production factor 2 homolog.	0.983
MAK16	RRS1	ENSSSCP00000047933	ENSSSCP00000006625	Protein MAK16 homolog; Belongs to the MAK16 family.	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	0.997
MAK16	RSL1D1	ENSSSCP00000047933	ENSSSCP00000061526	Protein MAK16 homolog; Belongs to the MAK16 family.	Ribosomal L1 domain-containing protein 1.	0.973