Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
SFT2D3Vesicle transport protein; May be involved in fusion of retrograde transport vesicles derived from an endocytic compartment with the Golgi complex. Belongs to the SFT2 family. (219 aa)    
Predicted Functional Partners:
TRAPPC3L
Trafficking protein particle complex subunit; May play a role in vesicular transport from endoplasmic reticulum to Golgi.
   
  
 0.870
GOLT1B
Uncharacterized protein.
   
 
 0.797
TRAPPC3
Trafficking protein particle complex subunit; May play a role in vesicular transport from endoplasmic reticulum to Golgi.
   
  
 0.765
NIPSNAP3A
Nipsnap homolog 3A.
      
 0.763
STX16-NPEPL1
t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.
    
 
 0.720
STX5
Syntaxin 5.
    
 
 0.708
COG6
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
    
   0.696
YKT6
Uncharacterized protein; Belongs to the synaptobrevin family.
    
 
 0.692
UBR4
Ubiquitin protein ligase E3 component n-recognin 4.
      
 0.653
RAB6A
RAB6A, member RAS oncogene family.
    
 
 0.652
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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