Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RUFY4RUN and FYVE domain containing 4. (571 aa)    
Predicted Functional Partners:
ZNF142
Uncharacterized protein.
      
 0.895
STK36
Serine/threonine kinase 36.
      
 0.829
TRAPPC9
Trafficking protein particle complex 9.
    
 
 0.769
TMBIM1
Uncharacterized protein; Belongs to the BI1 family.
   
  
 0.767
TTLL7
Tubulin tyrosine ligase like 7.
      
 0.704
DNAJC6
DnaJ heat shock protein family (Hsp40) member C6.
    
 
 0.703
RAB7B
RAB7B, member RAS oncogene family.
     
 0.702
RAB7A
RAB7A, member RAS oncogene family.
    
  0.701
FYCO1
FYVE and coiled-coil domain containing 1.
     
  0.695
ARPC2
Arp2/3 complex 34 kDa subunit; Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks.
 
  
 
 0.679
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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