STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IQUBIQ motif and ubiquitin domain containing. (800 aa)    
Predicted Functional Partners:
EFCAB1
EF-hand calcium binding domain 1.
   
 
 0.897
ARMC3
Armadillo repeat containing 3.
   
 
 0.884
C4orf47
Chromosome 4 open reading frame 47.
      
 0.878
C9orf116
Chromosome 9 open reading frame 116.
    
 
 0.877
ANKRD42
Ankyrin repeat domain 42.
   
 
 0.800
TTLL1
Tubulin tyrosine ligase like 1.
   
  
 0.692
DNAAF4
Dynein axonemal assembly factor 4.
   
 
 0.666
DNALI1
Dynein axonemal light intermediate chain 1.
   
 
 0.661
ARMC4
Armadillo repeat-containing protein 4 isoform 1.
   
 
 0.658
PRDM8
PR domain zinc finger protein 8 isoform X1.
      
 0.641
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.