STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F1SMH1_PIGCep57_CLD domain-containing protein. (228 aa)    
Predicted Functional Partners:
CEP63
Centrosomal protein 63.
    
 
 0.706
BUB1B
BUB1 N-terminal domain-containing protein.
      
 0.696
CEP290
Centrosomal protein 290.
   
 
 0.694
CEP135
Centrosomal protein of 135 kDa.
   
 
 0.646
ALMS1
ALMS1 centrosome and basal body associated protein.
      
 0.641
CEP164
Centrosomal protein 164.
      
 0.573
PLK4
Polo like kinase 4.
      
 0.573
POC1B
POC1 centriolar protein B.
      
 0.571
TRIP13
Pachytene checkpoint protein 2 homolog; Plays a key role in chromosome recombination and chromosome structure development during meiosis. Required at early steps in meiotic recombination that leads to non-crossovers pathways. Also needed for efficient completion of homologous synapsis by influencing crossover distribution along the chromosomes affecting both crossovers and non-crossovers pathways. Also required for development of higher- order chromosome structures and is needed for synaptonemal-complex formation. In males, required for efficient synapsis of the sex chromosomes and for [...]
   
  
 0.558
USP47
Ubiquitin specific peptidase 47; Belongs to the peptidase C19 family.
      
 0.556
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.