STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NPTX1Neuronal pentraxin 1. (385 aa)    
Predicted Functional Partners:
CBX6
Chromobox 6.
 
      0.771
CCDC170
Coiled-coil domain-containing protein 170.
    
 
 0.697
TEPSIN
Uncharacterized protein.
      
 0.692
LRFN1
Leucine rich repeat and fibronectin type III domain containing 1.
    
 
 0.662
NWD2
NACHT and WD repeat domain containing 2.
    
 
 0.620
KIF18A
Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
    
 
 0.612
COL23A1
Collagen type XXIII alpha 1 chain.
      
 0.611
SDK1
Sidekick cell adhesion molecule 1.
    
 
 0.610
TMEM25
Transmembrane protein 25.
   
  
 0.582
FAM171A2
Family with sequence similarity 171 member A2.
      
 0.571
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.