Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ALYREF | CASC3 | ENSSSCP00000071154 | ENSSSCP00000018523 | Aly/REF export factor. | CASC3 exon junction complex subunit. | 0.610 |
ALYREF | CWC22 | ENSSSCP00000071154 | ENSSSCP00000016961 | Aly/REF export factor. | CWC22 spliceosome associated protein homolog. | 0.854 |
ALYREF | EIF4A3 | ENSSSCP00000071154 | ENSSSCP00000018178 | Aly/REF export factor. | Eukaryotic initiation factor 4A-III, N-terminally processed; ATP-dependent RNA helicase. Involved in pre-mRNA splicing as component of the spliceosome. Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. The EJC is a dynamic structure consisting of core proteins and several peripheral nuclear and cytoplasmic associated factors that join the complex only transiently either during EJC assembly or during subsequent mRNA metabolism. The EJC marks the position of the exon-exon junction in the mature mRNA for the gene expr [...] | 0.991 |
ALYREF | MAGOH | ENSSSCP00000071154 | ENSSSCP00000004165 | Aly/REF export factor. | Mago homolog, exon junction complex subunit. | 0.902 |
ALYREF | RBM8A | ENSSSCP00000071154 | ENSSSCP00000023758 | Aly/REF export factor. | RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. | 0.888 |
ALYREF | RNPS1 | ENSSSCP00000071154 | ENSSSCP00000008596 | Aly/REF export factor. | RNA binding protein with serine rich domain 1. | 0.908 |
ALYREF | SRSF1 | ENSSSCP00000071154 | ENSSSCP00000057405 | Aly/REF export factor. | Serine/arginine-rich splicing factor 1; Plays a role in preventing exon skipping, ensuring the accuracy of splicing and regulating alternative splicing. Interacts with other spliceosomal components, via the RS domains, to form a bridge between the 5'- and 3'-splice site binding components, U1 snRNP and U2AF. Can stimulate binding of U1 snRNP to a 5'-splice site- containing pre-mRNA. Binds to purine-rich RNA sequences, either the octamer, 5'-RGAAGAAC-3' (r=A or G) or the decamers, AGGACAGAGC/AGGACGAAGC. Binds preferentially to the 5'-CGAGGCG-3' motif in vitro. Three copies of the octame [...] | 0.944 |
ALYREF | SRSF3 | ENSSSCP00000071154 | ENSSSCP00000001699 | Aly/REF export factor. | Serine and arginine rich splicing factor 3. | 0.876 |
CASC3 | ALYREF | ENSSSCP00000018523 | ENSSSCP00000071154 | CASC3 exon junction complex subunit. | Aly/REF export factor. | 0.610 |
CASC3 | CWC22 | ENSSSCP00000018523 | ENSSSCP00000016961 | CASC3 exon junction complex subunit. | CWC22 spliceosome associated protein homolog. | 0.853 |
CASC3 | EIF4A3 | ENSSSCP00000018523 | ENSSSCP00000018178 | CASC3 exon junction complex subunit. | Eukaryotic initiation factor 4A-III, N-terminally processed; ATP-dependent RNA helicase. Involved in pre-mRNA splicing as component of the spliceosome. Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. The EJC is a dynamic structure consisting of core proteins and several peripheral nuclear and cytoplasmic associated factors that join the complex only transiently either during EJC assembly or during subsequent mRNA metabolism. The EJC marks the position of the exon-exon junction in the mature mRNA for the gene expr [...] | 0.997 |
CASC3 | MAGOH | ENSSSCP00000018523 | ENSSSCP00000004165 | CASC3 exon junction complex subunit. | Mago homolog, exon junction complex subunit. | 0.921 |
CASC3 | RBM8A | ENSSSCP00000018523 | ENSSSCP00000023758 | CASC3 exon junction complex subunit. | RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. | 0.998 |
CASC3 | RNPS1 | ENSSSCP00000018523 | ENSSSCP00000008596 | CASC3 exon junction complex subunit. | RNA binding protein with serine rich domain 1. | 0.751 |
CASC3 | SMG1 | ENSSSCP00000018523 | ENSSSCP00000051228 | CASC3 exon junction complex subunit. | SMG1 nonsense mediated mRNA decay associated PI3K related kinase; Belongs to the PI3/PI4-kinase family. | 0.470 |
CASC3 | SRSF1 | ENSSSCP00000018523 | ENSSSCP00000057405 | CASC3 exon junction complex subunit. | Serine/arginine-rich splicing factor 1; Plays a role in preventing exon skipping, ensuring the accuracy of splicing and regulating alternative splicing. Interacts with other spliceosomal components, via the RS domains, to form a bridge between the 5'- and 3'-splice site binding components, U1 snRNP and U2AF. Can stimulate binding of U1 snRNP to a 5'-splice site- containing pre-mRNA. Binds to purine-rich RNA sequences, either the octamer, 5'-RGAAGAAC-3' (r=A or G) or the decamers, AGGACAGAGC/AGGACGAAGC. Binds preferentially to the 5'-CGAGGCG-3' motif in vitro. Three copies of the octame [...] | 0.577 |
CASC3 | SRSF3 | ENSSSCP00000018523 | ENSSSCP00000001699 | CASC3 exon junction complex subunit. | Serine and arginine rich splicing factor 3. | 0.515 |
CWC22 | ALYREF | ENSSSCP00000016961 | ENSSSCP00000071154 | CWC22 spliceosome associated protein homolog. | Aly/REF export factor. | 0.854 |
CWC22 | CASC3 | ENSSSCP00000016961 | ENSSSCP00000018523 | CWC22 spliceosome associated protein homolog. | CASC3 exon junction complex subunit. | 0.853 |
CWC22 | EIF4A3 | ENSSSCP00000016961 | ENSSSCP00000018178 | CWC22 spliceosome associated protein homolog. | Eukaryotic initiation factor 4A-III, N-terminally processed; ATP-dependent RNA helicase. Involved in pre-mRNA splicing as component of the spliceosome. Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. The EJC is a dynamic structure consisting of core proteins and several peripheral nuclear and cytoplasmic associated factors that join the complex only transiently either during EJC assembly or during subsequent mRNA metabolism. The EJC marks the position of the exon-exon junction in the mature mRNA for the gene expr [...] | 0.989 |
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