SHPK protein (Sus scrofa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SHPK

Sedoheptulokinase. (478 aa)

Predicted Functional Partners:

PRORP

0.920

HARBI1

0.901

PIGZ

0.879

DOCK3

0.862

GPD2

0.797

CHPT1

0.785

TRPV3

0.709

GALNT1

0.686

SYNE2

0.686

PSMD6

0.649

Your Current Organism:

Sus scrofa

NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CHPT1	DOCK3	ENSSSCP00000052534	ENSSSCP00000044545	Choline phosphotransferase 1; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	Dedicator of cytokinesis 3; Belongs to the DOCK family.	0.732
CHPT1	GALNT1	ENSSSCP00000052534	ENSSSCP00000004051	Choline phosphotransferase 1; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	Polypeptide N-acetylgalactosaminyltransferase 1 soluble form; Catalyzes the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on the protein receptor. Has a broad spectrum of substrates for peptides such as EA2, Muc5AC, Muc1a, Muc1b and Muc7 (By similarity).	0.547
CHPT1	HARBI1	ENSSSCP00000052534	ENSSSCP00000014090	Choline phosphotransferase 1; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	Harbinger transposase derived 1.	0.780
CHPT1	PIGZ	ENSSSCP00000052534	ENSSSCP00000038324	Choline phosphotransferase 1; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	Mannosyltransferase.	0.730
CHPT1	PRORP	ENSSSCP00000052534	ENSSSCP00000047877	Choline phosphotransferase 1; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	Proteasome endopeptidase complex.	0.786
CHPT1	SHPK	ENSSSCP00000052534	ENSSSCP00000018923	Choline phosphotransferase 1; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	Sedoheptulokinase.	0.785
CHPT1	SYNE2	ENSSSCP00000052534	ENSSSCP00000055128	Choline phosphotransferase 1; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	Spectrin repeat containing nuclear envelope protein 2.	0.541
DOCK3	CHPT1	ENSSSCP00000044545	ENSSSCP00000052534	Dedicator of cytokinesis 3; Belongs to the DOCK family.	Choline phosphotransferase 1; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	0.732
DOCK3	GALNT1	ENSSSCP00000044545	ENSSSCP00000004051	Dedicator of cytokinesis 3; Belongs to the DOCK family.	Polypeptide N-acetylgalactosaminyltransferase 1 soluble form; Catalyzes the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on the protein receptor. Has a broad spectrum of substrates for peptides such as EA2, Muc5AC, Muc1a, Muc1b and Muc7 (By similarity).	0.609
DOCK3	HARBI1	ENSSSCP00000044545	ENSSSCP00000014090	Dedicator of cytokinesis 3; Belongs to the DOCK family.	Harbinger transposase derived 1.	0.854
DOCK3	PIGZ	ENSSSCP00000044545	ENSSSCP00000038324	Dedicator of cytokinesis 3; Belongs to the DOCK family.	Mannosyltransferase.	0.798
DOCK3	PRORP	ENSSSCP00000044545	ENSSSCP00000047877	Dedicator of cytokinesis 3; Belongs to the DOCK family.	Proteasome endopeptidase complex.	0.867
DOCK3	SHPK	ENSSSCP00000044545	ENSSSCP00000018923	Dedicator of cytokinesis 3; Belongs to the DOCK family.	Sedoheptulokinase.	0.862
DOCK3	SYNE2	ENSSSCP00000044545	ENSSSCP00000055128	Dedicator of cytokinesis 3; Belongs to the DOCK family.	Spectrin repeat containing nuclear envelope protein 2.	0.614
GALNT1	CHPT1	ENSSSCP00000004051	ENSSSCP00000052534	Polypeptide N-acetylgalactosaminyltransferase 1 soluble form; Catalyzes the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on the protein receptor. Has a broad spectrum of substrates for peptides such as EA2, Muc5AC, Muc1a, Muc1b and Muc7 (By similarity).	Choline phosphotransferase 1; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	0.547
GALNT1	DOCK3	ENSSSCP00000004051	ENSSSCP00000044545	Polypeptide N-acetylgalactosaminyltransferase 1 soluble form; Catalyzes the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on the protein receptor. Has a broad spectrum of substrates for peptides such as EA2, Muc5AC, Muc1a, Muc1b and Muc7 (By similarity).	Dedicator of cytokinesis 3; Belongs to the DOCK family.	0.609
GALNT1	HARBI1	ENSSSCP00000004051	ENSSSCP00000014090	Polypeptide N-acetylgalactosaminyltransferase 1 soluble form; Catalyzes the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on the protein receptor. Has a broad spectrum of substrates for peptides such as EA2, Muc5AC, Muc1a, Muc1b and Muc7 (By similarity).	Harbinger transposase derived 1.	0.686
GALNT1	PIGZ	ENSSSCP00000004051	ENSSSCP00000038324	Polypeptide N-acetylgalactosaminyltransferase 1 soluble form; Catalyzes the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on the protein receptor. Has a broad spectrum of substrates for peptides such as EA2, Muc5AC, Muc1a, Muc1b and Muc7 (By similarity).	Mannosyltransferase.	0.603
GALNT1	PRORP	ENSSSCP00000004051	ENSSSCP00000047877	Polypeptide N-acetylgalactosaminyltransferase 1 soluble form; Catalyzes the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on the protein receptor. Has a broad spectrum of substrates for peptides such as EA2, Muc5AC, Muc1a, Muc1b and Muc7 (By similarity).	Proteasome endopeptidase complex.	0.687
GALNT1	SHPK	ENSSSCP00000004051	ENSSSCP00000018923	Polypeptide N-acetylgalactosaminyltransferase 1 soluble form; Catalyzes the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on the protein receptor. Has a broad spectrum of substrates for peptides such as EA2, Muc5AC, Muc1a, Muc1b and Muc7 (By similarity).	Sedoheptulokinase.	0.686