STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FAM172AFamily with sequence similarity 172 member A. (416 aa)    
Predicted Functional Partners:
PLAC8L1
PLAC8 like 1.
      
 0.891
MCTP1
Multiple C2 and transmembrane domain containing 1.
      
 0.773
SLF1
SMC5-SMC6 complex localization factor 1.
      
 0.761
GRIK3
Glutamate ionotropic receptor kainate type subunit 3.
      
 0.689
A5Z0F6_PIG
Endonuclease/reverse transcriptase.
      
 0.611
LMBR1
Limb region 1 protein homolog isoform b; Belongs to the LIMR family.
      
 0.582
NR2F1
Nuclear receptor subfamily 2 group F member 1.
      
 0.564
LOC100511430
Spermatid nuclear transition protein 4; Involved in nuclear basic protein transition: histones are replaced by spermatid specific proteins which are themselves replaced by protamines in late spermatids.
      
 0.531
EFHC2
EF-hand domain-containing family member C2.
      
 0.506
BORCS7
Uncharacterized protein.
      
 0.506
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.