NEXN protein (Sus scrofa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

NEXN

Far upstream element-binding protein 1 isoform X9. (675 aa)

Predicted Functional Partners:

EBNA1BP2

0.924

MAK16

0.908

RPF1

0.880

NIFK

0.878

GTPBP4

0.870

RRP15

0.866

RSL24D1

0.838

RRP1B

0.826

RRP1

0.826

RSL1D1

0.821

Your Current Organism:

Sus scrofa

NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EBNA1BP2	GTPBP4	ENSSSCP00000019639	ENSSSCP00000024246	EBNA1 binding protein 2.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.985
EBNA1BP2	MAK16	ENSSSCP00000019639	ENSSSCP00000047933	EBNA1 binding protein 2.	Protein MAK16 homolog; Belongs to the MAK16 family.	0.993
EBNA1BP2	NEXN	ENSSSCP00000019639	ENSSSCP00000021204	EBNA1 binding protein 2.	Far upstream element-binding protein 1 isoform X9.	0.924
EBNA1BP2	NIFK	ENSSSCP00000019639	ENSSSCP00000016670	EBNA1 binding protein 2.	Nucleolar protein interacting with the FHA domain of MKI67.	0.997
EBNA1BP2	RPF1	ENSSSCP00000019639	ENSSSCP00000025516	EBNA1 binding protein 2.	Ribosome production factor 1 homolog.	0.994
EBNA1BP2	RRP1	ENSSSCP00000019639	ENSSSCP00000045889	EBNA1 binding protein 2.	Ribosomal RNA processing protein 1 homolog A.	0.976
EBNA1BP2	RRP15	ENSSSCP00000019639	ENSSSCP00000074525	EBNA1 binding protein 2.	Ribosomal RNA processing 15 homolog.	0.958
EBNA1BP2	RRP1B	ENSSSCP00000019639	ENSSSCP00000019280	EBNA1 binding protein 2.	Ribosomal RNA processing 1B.	0.979
EBNA1BP2	RSL1D1	ENSSSCP00000019639	ENSSSCP00000061526	EBNA1 binding protein 2.	Ribosomal L1 domain-containing protein 1.	0.995
EBNA1BP2	RSL24D1	ENSSSCP00000019639	ENSSSCP00000021248	EBNA1 binding protein 2.	Ribosomal L24 domain containing 1.	0.978
GTPBP4	EBNA1BP2	ENSSSCP00000024246	ENSSSCP00000019639	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	EBNA1 binding protein 2.	0.985
GTPBP4	MAK16	ENSSSCP00000024246	ENSSSCP00000047933	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	Protein MAK16 homolog; Belongs to the MAK16 family.	0.986
GTPBP4	NEXN	ENSSSCP00000024246	ENSSSCP00000021204	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	Far upstream element-binding protein 1 isoform X9.	0.870
GTPBP4	NIFK	ENSSSCP00000024246	ENSSSCP00000016670	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	Nucleolar protein interacting with the FHA domain of MKI67.	0.994
GTPBP4	RPF1	ENSSSCP00000024246	ENSSSCP00000025516	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	Ribosome production factor 1 homolog.	0.981
GTPBP4	RRP1	ENSSSCP00000024246	ENSSSCP00000045889	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	Ribosomal RNA processing protein 1 homolog A.	0.910
GTPBP4	RRP15	ENSSSCP00000024246	ENSSSCP00000074525	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	Ribosomal RNA processing 15 homolog.	0.915
GTPBP4	RRP1B	ENSSSCP00000024246	ENSSSCP00000019280	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	Ribosomal RNA processing 1B.	0.910
GTPBP4	RSL1D1	ENSSSCP00000024246	ENSSSCP00000061526	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	Ribosomal L1 domain-containing protein 1.	0.987
GTPBP4	RSL24D1	ENSSSCP00000024246	ENSSSCP00000021248	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	Ribosomal L24 domain containing 1.	0.997