STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSAMPLimbic system associated membrane protein. (345 aa)    
Predicted Functional Partners:
ATAD5
ATPase family AAA domain containing 5.
   
 
 0.712
VSTM4
V-set and transmembrane domain containing 4.
    
 
 0.688
PPIL6
Peptidyl-prolyl cis-trans isomerase-like 6 isoform 1.
    
 
 0.667
C1QL3
Complement C1q-like protein 3.
    
 
 0.591
CDH9
Cadherin-9 preproprotein; Cadherins are calcium-dependent cell adhesion proteins.
   
 
 0.585
HPCAL4
Hippocalcin like 4.
   
  
 0.575
LGALS12
Galectin.
    
 
 0.574
LRRTM1
Leucine-rich repeat transmembrane neuronal protein 1 isoform X1.
   
 
 0.563
ZNF316
Zinc finger protein 316.
      
 0.557
PXDC1
Uncharacterized protein.
      
 0.547
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.