STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
I3LFU3_PIGRING-type domain-containing protein. (2080 aa)    
Predicted Functional Partners:
RTP4
Receptor-transporting protein 4.
   
  
 0.837
HERC6
HECT and RLD domain containing E3 ubiquitin protein ligase family member 6.
   
 
 0.834
UBE2L6
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
   
 
 0.736
BCL2L14
BCL2 like 14.
   
 
 0.591
PARP14
Poly [ADP-ribose] polymerase.
   
 
 0.558
LOC100520273
Poly [ADP-ribose] polymerase.
   
 
 0.558
RTP3
zf-3CxxC domain-containing protein.
   
  
 0.548
N4BP1
NEDD4-binding protein 1.
      
 0.530
USP25
Ubiquitin specific peptidase 25; Belongs to the peptidase C19 family.
    
 
 0.505
RNF19B
RBR-type E3 ubiquitin transferase.
    
 
 0.503
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.