STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3F3AH3 histone, family 3A. (136 aa)    
Predicted Functional Partners:
H2BU1
Histone H2B; Belongs to the histone H2B family.
 
 
 
 0.888
KDM6A
Lysine demethylase 6A.
   
 
 0.840
KDM1A
Lysine-specific histone demethylase; Histone demethylase that demethylates both 'Lys-4' (H3K4me) and 'Lys-9' (H3K9me) of histone H3, thereby acting as a coactivator or a corepressor, depending on the context. Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed. Acts as a corepressor by mediating demethylation of H3K4me, a specific tag for epigenetic transcriptional activation. Demethylates both mono- (H3K4me1) and di-methylated (H3K4me2) H3K4me; Belongs to the flavin monoamine oxidase family.
    
 
 0.828
WDR5
WD repeat domain 5.
   
 
 0.815
H2BE1
Histone H2B; Belongs to the histone H2B family.
 
 
 
 0.770
LOC100152878
Histone H2B; Belongs to the histone H2B family.
 
 
 
 0.758
I3L6E6_PIG
TPR_REGION domain-containing protein.
   
 
 0.744
KDM6B
Lysine demethylase 6B.
   
 
 0.744
UBB
Ubiquitin B.
   
 
 0.739
ASF1A
Anti-silencing function 1A histone chaperone.
   
 
 0.723
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.