STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRPF18SFM domain-containing protein. (342 aa)    
Predicted Functional Partners:
SNRNP200
U5 small nuclear ribonucleoprotein 200 kDa helicase isoform X1.
    
 0.982
SLU7
Pre-mRNA-splicing factor SLU7 isoform X1.
  
 
 0.982
CDC5L
Cell division cycle 5-like protein.
   
 
 0.972
BUD31
Protein BUD31 homolog isoform X2.
    
 
 0.965
PRPF8
Pre-mRNA processing factor 8.
    
 0.955
LSM6
LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.
     
 0.952
CDC40
Pre-mRNA-processing factor 17.
   
 
 0.897
GGPS1
Geranylgeranyl diphosphate synthase 1; Belongs to the FPP/GGPP synthase family.
 
      0.895
EFTUD2
116 kDa U5 small nuclear ribonucleoprotein component.
   
 0.883
PRPF31
U4/U6 small nuclear ribonucleoprotein Prp31 isoform X1.
   
 
 0.874
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.