STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VRTNVertnin; Belongs to the vertnin family. (697 aa)    
Predicted Functional Partners:
PROX2
Prospero homeobox 2.
      
 0.871
ABCD4
ATP binding cassette subfamily D member 4.
      
 0.858
SYNDIG1L
Synapse differentiation inducing 1 like.
   
  
 0.847
AREL1
Apoptosis resistant E3 ubiquitin protein ligase 1.
      
 0.830
PDIA4
Protein disulfide-isomerase.
      
 0.746
LTBP2
Latent transforming growth factor beta binding protein 2.
    
 
 0.744
NR6A1
Nuclear receptor subfamily 6 group A member 1; Orphan nuclear receptor. Binds to a response element containing the sequence 5'-TCAAGGTCA-3'. May be involved in the regulation of gene expression in germ cell development during gametogenesis (By similarity); Belongs to the nuclear hormone receptor family. NR6 subfamily.
    
 
 0.727
ZSCAN10
Zinc finger and SCAN domain containing 10.
   
 
 0.621
LRRC74A
Leucine rich repeat containing 74A.
   
  
 0.618
WDR92
WD repeat-containing protein 92 isoform 1.
    
 
 0.615
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.