STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMARCA5SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5. (1003 aa)    
Predicted Functional Partners:
BAZ1B
Bromodomain adjacent to zinc finger domain 1B.
   
 0.983
RSF1
PHD-type domain-containing protein.
   
 0.971
BAZ1A
Bromodomain adjacent to zinc finger domain 1A.
   
 0.935
POLE3
Uncharacterized protein.
    
 0.919
BPTF
Bromodomain PHD finger transcription factor.
   
 0.899
CHRAC1
Chromatin accessibility complex subunit 1.
    
 0.890
CECR2
CECR2 histone acetyl-lysine reader.
   
 0.857
DDX21
DEAD (Asp-Glu-Ala-Asp) box helicase 21.
   
 0.856
MYBBP1A
MYB binding protein 1a.
   
 0.846
RBBP4
WD_REPEATS_REGION domain-containing protein.
   
 
 0.839
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.