STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PAX6Paired box 6. (498 aa)    
Predicted Functional Partners:
TBR1
T-box brain transcription factor 1.
   
 
 0.934
SATB2
DNA-binding protein SATB.
      
 0.927
NANOG
Homeobox domain-containing protein.
      
 0.894
FOXG1
Forkhead box G1.
   
 
 0.893
GFAP
Glial fibrillary acidic protein; Belongs to the intermediate filament family.
    
 
 0.883
FOXA2
Hepatocyte nuclear factor 3-beta isoform 1.
   
  
 0.879
NES
Nestin; Belongs to the intermediate filament family.
      
 0.873
OLIG2
Oligodendrocyte transcription factor 2.
   
  
 0.868
SOX17
SRY-box transcription factor 17.
   
 
 0.864
RCVRN
Recoverin.
   
  
 0.859
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.