STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100511430Spermatid nuclear transition protein 4; Involved in nuclear basic protein transition: histones are replaced by spermatid specific proteins which are themselves replaced by protamines in late spermatids. (139 aa)    
Predicted Functional Partners:
TNP3
Spermatid nuclear transition protein 3; Involved in nuclear basic protein transition: histones are replaced by spermatid specific proteins which are themselves replaced by protamines in late spermatids.
      
 0.920
BOLA1
BolA family member 1; Belongs to the BolA/IbaG family.
      
 0.541
EFHC2
EF-hand domain-containing family member C2.
      
 0.537
FAM172A
Family with sequence similarity 172 member A.
      
 0.531
EBP
Emopamil binding protein (Sterol isomerase).
      
 0.527
MAPK1IP1L
Mitogen-activated protein kinase 1 interacting protein 1 like.
      
 0.514
KLHL29
Kelch like family member 29.
      
 0.506
ARHGEF26
Rho guanine nucleotide exchange factor 26.
      
 0.504
LOC100515469
Olfactory receptor.
      
 0.485
LOC100515647
Olfactory receptor.
      
 0.485
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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