STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCF20Transcription factor 20. (1932 aa)    
Predicted Functional Partners:
TNRC6C
Trinucleotide repeat containing adaptor 6C.
  
 
 0.710
UBTF
Upstream binding transcription factor.
   
 
 0.600
BTAF1
B-TFIID TATA-box binding protein associated factor 1.
   
 
 0.596
ARHGAP21
Rho GTPase activating protein 21.
   
  
 0.580
GATAD2A
GATA zinc finger domain containing 2A.
   
 
 0.537
DMAP1
DNA methyltransferase 1-associated protein 1 isoform X1.
   
  
 0.536
BRD1
Bromodomain containing 1.
   
 
 0.527
NIPBL
Nipped-B protein.
   
  
 0.521
AKNA
AT-hook transcription factor.
      
 0.519
SMARCD1
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1.
   
 
 0.516
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.