STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YIPF3Protein YIPF. (335 aa)    
Predicted Functional Partners:
YIPF4
Protein YIPF.
   
 
 0.666
YIPF5
Protein YIPF.
   
 
 0.608
YIPF6
Protein YIPF.
   
 
 0.553
SELENOS
Selenoprotein S; Involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins. Participates in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner. Probably acts by serving as a linker between DERL1, which mediates the retrotranslocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination (By similarity).
   
 
 0.545
POLR1C
RNA polymerase I and III subunit C.
      
 0.527
OCEL1
Occludin/ELL domain containing 1.
      
 0.506
TLCD1
TLC domain containing 1.
      
 0.504
PHYHD1
Phytanoyl-CoA dioxygenase domain containing 1.
      
 0.502
ARMCX3
Armadillo repeat-containing X-linked protein 3.
    
 
 0.474
CDC42EP5
CDC42 effector protein 5.
      
 0.469
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.