STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RDH13Retinol dehydrogenase 13 isoform X1; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (334 aa)    
Predicted Functional Partners:
C1orf109
Chromosome 1 open reading frame 109.
   
    0.840
ISOC2
Isochorismatase domain containing 2.
  
 0.829
LIX1
Limb and CNS expressed 1.
   
    0.811
CALHM2
Calcium homeostasis modulator protein 2 isoform X1.
   
   0.811
ZNF579
Zinc finger protein 579.
    
 
 0.793
FIZ1
FLT3 interacting zinc finger 1.
    
 
 0.793
PPP6R1
Protein phosphatase 6 regulatory subunit 1.
      
 0.780
NAT14
N-acetyltransferase 14 (putative).
      
 0.780
CWC25
Pre-mRNA-splicing factor CWC25 homolog.
   
    0.764
ACOT11
Acyl-CoA thioesterase 11.
   
 
 0.722
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.