STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RNF144BRBR-type E3 ubiquitin transferase. (333 aa)    
Predicted Functional Partners:
TTC6
TPR_REGION domain-containing protein.
      
 0.844
TMEM150A
Transmembrane protein 150A.
      
 0.780
REC114
Meiotic recombination protein REC114 isoform 1.
   
  
 0.764
STXBP6
Syntaxin binding protein 6.
      
 0.760
HSPH1
Heat shock protein family H (Hsp110) member 1.
    
 
 0.720
ICA1
Islet cell autoantigen 1.
      
 0.674
SH3BGRL
Uncharacterized protein.
      
 0.654
FRMD4A
FERM domain containing 4A.
      
 0.653
RPS6KA6
Ribosomal protein S6 kinase.
      
 0.652
FAM83B
Family with sequence similarity 83 member B.
    
 
 0.608
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.