STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FAT3Uncharacterized protein. (894 aa)    
Predicted Functional Partners:
DCHS1
Dachsous cadherin-related 1.
 
 
   0.703
FJX1
Four-jointed box kinase 1.
   
 
 0.640
NT5C1A
5'-nucleotidase, cytosolic IA.
   
 
 0.620
PCDH15
Uncharacterized protein.
 
 
 
 0.585
PCDHB7
Protocadherin beta 7.
 
 
   0.538
AGTPBP1
ATP/GTP binding protein 1.
   
  
 0.534
COL28A1
Collagen type XXVIII alpha 1 chain.
    
 
 0.528
CRTAC1
Cartilage acidic protein 1.
      
 0.510
DSG1
Desmoglein-1; Component of intercellular desmosome junctions. Involved in the interaction of plaque proteins and intermediate filaments mediating cell-cell adhesion (By similarity).
   
 
 0.507
CNTN6
Contactin 6.
   
 
 0.499
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.