SRSF5 protein (Sus scrofa) - STRING interaction network

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Score

SRSF5

Serine and arginine rich splicing factor 5. (271 aa)

Predicted Functional Partners:

SRPK1

0.976

LOC100153087

0.952

NXF1

0.952

SLU7

0.943

U2AF2

0.943

SRSF3

0.924

SRSF2

0.922

SRSF1

0.909

SRSF7

0.908

PABPN1

0.896

Your Current Organism:

Sus scrofa

NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC100153087	NXF1	ENSSSCP00000013304	ENSSSCP00000060958	Uncharacterized protein.	Nuclear RNA export factor 1.	0.902
LOC100153087	PABPN1	ENSSSCP00000013304	ENSSSCP00000047220	Uncharacterized protein.	BCL2L2-PABPN1 protein.	0.500
LOC100153087	SRSF1	ENSSSCP00000013304	ENSSSCP00000057405	Uncharacterized protein.	Serine/arginine-rich splicing factor 1; Plays a role in preventing exon skipping, ensuring the accuracy of splicing and regulating alternative splicing. Interacts with other spliceosomal components, via the RS domains, to form a bridge between the 5'- and 3'-splice site binding components, U1 snRNP and U2AF. Can stimulate binding of U1 snRNP to a 5'-splice site- containing pre-mRNA. Binds to purine-rich RNA sequences, either the octamer, 5'-RGAAGAAC-3' (r=A or G) or the decamers, AGGACAGAGC/AGGACGAAGC. Binds preferentially to the 5'-CGAGGCG-3' motif in vitro. Three copies of the octame [...]	0.957
LOC100153087	SRSF2	ENSSSCP00000013304	ENSSSCP00000040547	Uncharacterized protein.	Serine/arginine-rich splicing factor 2; Necessary for the splicing of pre-mRNA. It is required for formation of the earliest ATP-dependent splicing complex and interacts with spliceosomal components bound to both the 5'- and 3'-splice sites during spliceosome assembly. It also is required for ATP-dependent interactions of both U1 and U2 snRNPs with pre-mRNA. Interacts with other spliceosomal components, via the RS domains, to form a bridge between the 5'- and 3'-splice site binding components, U1 snRNP and U2AF. Binds to purine-rich RNA sequences, either 5'-AGSAGAGTA-3' (S=C or G) or 5 [...]	0.926
LOC100153087	SRSF3	ENSSSCP00000013304	ENSSSCP00000001699	Uncharacterized protein.	Serine and arginine rich splicing factor 3.	0.948
LOC100153087	SRSF5	ENSSSCP00000013304	ENSSSCP00000036224	Uncharacterized protein.	Serine and arginine rich splicing factor 5.	0.952
LOC100153087	SRSF7	ENSSSCP00000013304	ENSSSCP00000046977	Uncharacterized protein.	Serine/arginine-rich splicing factor 7 isoform 1.	0.951
NXF1	LOC100153087	ENSSSCP00000060958	ENSSSCP00000013304	Nuclear RNA export factor 1.	Uncharacterized protein.	0.902
NXF1	PABPN1	ENSSSCP00000060958	ENSSSCP00000047220	Nuclear RNA export factor 1.	BCL2L2-PABPN1 protein.	0.500
NXF1	SRSF1	ENSSSCP00000060958	ENSSSCP00000057405	Nuclear RNA export factor 1.	Serine/arginine-rich splicing factor 1; Plays a role in preventing exon skipping, ensuring the accuracy of splicing and regulating alternative splicing. Interacts with other spliceosomal components, via the RS domains, to form a bridge between the 5'- and 3'-splice site binding components, U1 snRNP and U2AF. Can stimulate binding of U1 snRNP to a 5'-splice site- containing pre-mRNA. Binds to purine-rich RNA sequences, either the octamer, 5'-RGAAGAAC-3' (r=A or G) or the decamers, AGGACAGAGC/AGGACGAAGC. Binds preferentially to the 5'-CGAGGCG-3' motif in vitro. Three copies of the octame [...]	0.957
NXF1	SRSF2	ENSSSCP00000060958	ENSSSCP00000040547	Nuclear RNA export factor 1.	Serine/arginine-rich splicing factor 2; Necessary for the splicing of pre-mRNA. It is required for formation of the earliest ATP-dependent splicing complex and interacts with spliceosomal components bound to both the 5'- and 3'-splice sites during spliceosome assembly. It also is required for ATP-dependent interactions of both U1 and U2 snRNPs with pre-mRNA. Interacts with other spliceosomal components, via the RS domains, to form a bridge between the 5'- and 3'-splice site binding components, U1 snRNP and U2AF. Binds to purine-rich RNA sequences, either 5'-AGSAGAGTA-3' (S=C or G) or 5 [...]	0.926
NXF1	SRSF3	ENSSSCP00000060958	ENSSSCP00000001699	Nuclear RNA export factor 1.	Serine and arginine rich splicing factor 3.	0.948
NXF1	SRSF5	ENSSSCP00000060958	ENSSSCP00000036224	Nuclear RNA export factor 1.	Serine and arginine rich splicing factor 5.	0.952
NXF1	SRSF7	ENSSSCP00000060958	ENSSSCP00000046977	Nuclear RNA export factor 1.	Serine/arginine-rich splicing factor 7 isoform 1.	0.951
PABPN1	LOC100153087	ENSSSCP00000047220	ENSSSCP00000013304	BCL2L2-PABPN1 protein.	Uncharacterized protein.	0.500
PABPN1	NXF1	ENSSSCP00000047220	ENSSSCP00000060958	BCL2L2-PABPN1 protein.	Nuclear RNA export factor 1.	0.500
PABPN1	SLU7	ENSSSCP00000047220	ENSSSCP00000018045	BCL2L2-PABPN1 protein.	Pre-mRNA-splicing factor SLU7 isoform X1.	0.807
PABPN1	SRPK1	ENSSSCP00000047220	ENSSSCP00000001688	BCL2L2-PABPN1 protein.	SRSF protein kinase 1.	0.484
PABPN1	SRSF1	ENSSSCP00000047220	ENSSSCP00000057405	BCL2L2-PABPN1 protein.	Serine/arginine-rich splicing factor 1; Plays a role in preventing exon skipping, ensuring the accuracy of splicing and regulating alternative splicing. Interacts with other spliceosomal components, via the RS domains, to form a bridge between the 5'- and 3'-splice site binding components, U1 snRNP and U2AF. Can stimulate binding of U1 snRNP to a 5'-splice site- containing pre-mRNA. Binds to purine-rich RNA sequences, either the octamer, 5'-RGAAGAAC-3' (r=A or G) or the decamers, AGGACAGAGC/AGGACGAAGC. Binds preferentially to the 5'-CGAGGCG-3' motif in vitro. Three copies of the octame [...]	0.918
PABPN1	SRSF2	ENSSSCP00000047220	ENSSSCP00000040547	BCL2L2-PABPN1 protein.	Serine/arginine-rich splicing factor 2; Necessary for the splicing of pre-mRNA. It is required for formation of the earliest ATP-dependent splicing complex and interacts with spliceosomal components bound to both the 5'- and 3'-splice sites during spliceosome assembly. It also is required for ATP-dependent interactions of both U1 and U2 snRNPs with pre-mRNA. Interacts with other spliceosomal components, via the RS domains, to form a bridge between the 5'- and 3'-splice site binding components, U1 snRNP and U2AF. Binds to purine-rich RNA sequences, either 5'-AGSAGAGTA-3' (S=C or G) or 5 [...]	0.840