STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TMCO2Transmembrane and coiled-coil domains 2. (181 aa)    
Predicted Functional Partners:
CCDC54
Coiled-coil domain containing 54.
   
  
 0.543
GALNTL5
Polypeptide N-acetylgalactosaminyltransferase like 5.
   
  
 0.536
FAM209B
Orthologue of H. sapiens chromosome 20 open reading frame 106 (C20orf106).
      
 0.514
FAM71F1
Family with sequence similarity 71 member F1.
      
 0.514
CCDC187
Uncharacterized protein.
      
 0.514
FAM81B
Family with sequence similarity 81 member B.
      
 0.513
CT83
Cancer/testis antigen 83.
      
 0.513
CABS1
Calcium binding protein, spermatid associated 1.
      
 0.508
PROCA1
Protein interacting with cyclin A1.
      
 0.506
TMCO5A
Transmembrane and coiled-coil domains 5A.
      
 0.505
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.