STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XPCXPC complex subunit, DNA damage recognition and repair factor. (1018 aa)    
Predicted Functional Partners:
CETN2
Centrin 2.
    
 0.997
RAD23B
RAD23 homolog B, nucleotide excision repair protein.
   
 0.942
ERCC2
General transcription and DNA repair factor IIH helicase subunit XPD isoform 1.
    
 0.942
ERCC3
ERCC excision repair 3, TFIIH core complex helicase subunit.
   
 0.941
GTF2H1
General transcription factor IIH subunit 1.
    
 0.939
RAD23A
RAD23 homolog A, nucleotide excision repair protein.
   
 0.937
DDB2
DNA damage-binding protein 2 isoform WT.
   
 0.933
ERCC8
ERCC excision repair 8, CSA ubiquitin ligase complex subunit.
     
 0.923
XPA
XPA, DNA damage recognition and repair factor.
    
 0.872
ERCC5
ERCC excision repair 5, endonuclease.
   
 
 0.840
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.