STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHERPCalcium homeostasis endoplasmic reticulum protein. (916 aa)    
Predicted Functional Partners:
U2SURP
U2 snRNP-associated SURP motif-containing protein isoform X2.
   
 0.972
RBM17
RNA binding motif protein 17.
   
 0.963
DHX15
Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15.
   
 0.943
PHF5A
PHD finger protein 5A.
   
 0.877
PUF60
Poly(U)-binding-splicing factor PUF60 isoform a.
   
 0.853
CIB3
Calcium and integrin binding family member 3.
      
 0.852
DDX46
DEAD-box helicase 46.
   
 
 0.840
NR2C2AP
Nuclear receptor 2C2 associated protein.
      
 0.831
SNRPB2
RU2B.
   
  0.813
SNRPA1
Small nuclear ribonucleoprotein polypeptide A.
    
 0.811
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.