NBEAL1 protein (Sus scrofa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

NBEAL1

Uncharacterized protein. (3197 aa)

Predicted Functional Partners:

FAM117B

0.678

ICA1L

0.656

PAQR3

0.647

VPS13D

0.600

SHQ1

0.577

WDR12

0.573

HSPA14

0.570

ZC3H8

0.554

SART3

0.548

ZYG11A

0.546

Your Current Organism:

Sus scrofa

NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FAM117B	ICA1L	ENSSSCP00000017073	ENSSSCP00000044418	Family with sequence similarity 117 member B.	Islet cell autoantigen 1 like.	0.760
FAM117B	NBEAL1	ENSSSCP00000017073	ENSSSCP00000043876	Family with sequence similarity 117 member B.	Uncharacterized protein.	0.678
FAM117B	PAQR3	ENSSSCP00000017073	ENSSSCP00000009873	Family with sequence similarity 117 member B.	Progestin and adipoQ receptor family member 3.	0.497
FAM117B	WDR12	ENSSSCP00000017073	ENSSSCP00000017075	Family with sequence similarity 117 member B.	Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.468
HSPA14	NBEAL1	ENSSSCP00000071129	ENSSSCP00000043876	Heat shock protein family A (Hsp70) member 14; Belongs to the heat shock protein 70 family.	Uncharacterized protein.	0.570
HSPA14	SART3	ENSSSCP00000071129	ENSSSCP00000036226	Heat shock protein family A (Hsp70) member 14; Belongs to the heat shock protein 70 family.	Spliceosome associated factor 3, U4/U6 recycling protein.	0.582
HSPA14	ZC3H8	ENSSSCP00000071129	ENSSSCP00000057275	Heat shock protein family A (Hsp70) member 14; Belongs to the heat shock protein 70 family.	Zinc finger CCCH-type containing 8.	0.574
ICA1L	FAM117B	ENSSSCP00000044418	ENSSSCP00000017073	Islet cell autoantigen 1 like.	Family with sequence similarity 117 member B.	0.760
ICA1L	NBEAL1	ENSSSCP00000044418	ENSSSCP00000043876	Islet cell autoantigen 1 like.	Uncharacterized protein.	0.656
ICA1L	PAQR3	ENSSSCP00000044418	ENSSSCP00000009873	Islet cell autoantigen 1 like.	Progestin and adipoQ receptor family member 3.	0.481
NBEAL1	FAM117B	ENSSSCP00000043876	ENSSSCP00000017073	Uncharacterized protein.	Family with sequence similarity 117 member B.	0.678
NBEAL1	HSPA14	ENSSSCP00000043876	ENSSSCP00000071129	Uncharacterized protein.	Heat shock protein family A (Hsp70) member 14; Belongs to the heat shock protein 70 family.	0.570
NBEAL1	ICA1L	ENSSSCP00000043876	ENSSSCP00000044418	Uncharacterized protein.	Islet cell autoantigen 1 like.	0.656
NBEAL1	PAQR3	ENSSSCP00000043876	ENSSSCP00000009873	Uncharacterized protein.	Progestin and adipoQ receptor family member 3.	0.647
NBEAL1	SART3	ENSSSCP00000043876	ENSSSCP00000036226	Uncharacterized protein.	Spliceosome associated factor 3, U4/U6 recycling protein.	0.548
NBEAL1	SHQ1	ENSSSCP00000043876	ENSSSCP00000012276	Uncharacterized protein.	SHQ1, H/ACA ribonucleoprotein assembly factor.	0.577
NBEAL1	VPS13D	ENSSSCP00000043876	ENSSSCP00000003729	Uncharacterized protein.	Vacuolar protein sorting 13 homolog D.	0.600
NBEAL1	WDR12	ENSSSCP00000043876	ENSSSCP00000017075	Uncharacterized protein.	Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.573
NBEAL1	ZC3H8	ENSSSCP00000043876	ENSSSCP00000057275	Uncharacterized protein.	Zinc finger CCCH-type containing 8.	0.554
NBEAL1	ZYG11A	ENSSSCP00000043876	ENSSSCP00000041961	Uncharacterized protein.	Zyg-11 family member A, cell cycle regulator.	0.546