RPAP1 protein (Sus scrofa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RPAP1

RNA polymerase II associated protein 1. (1393 aa)

Predicted Functional Partners:

POLR2M

0.717

RNF41

0.650

GPN3

0.646

GPN1

0.604

NDUFAF1

0.577

VPS52

0.575

ARHGEF11

0.570

POLR2C

0.538

PREPL

0.515

RPAP2

0.515

Your Current Organism:

Sus scrofa

NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARHGEF11	RPAP1	ENSSSCP00000068410	ENSSSCP00000043917	Rho guanine nucleotide exchange factor 11.	RNA polymerase II associated protein 1.	0.570
GPN1	GPN3	ENSSSCP00000049779	ENSSSCP00000061970	GPN-loop GTPase; Small GTPase required for proper nuclear import of RNA polymerase II (RNAPII). May act at an RNAP assembly step prior to nuclear import.	GPN-loop GTPase 3; Small GTPase required for proper nuclear import of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.	0.900
GPN1	POLR2C	ENSSSCP00000049779	ENSSSCP00000021748	GPN-loop GTPase; Small GTPase required for proper nuclear import of RNA polymerase II (RNAPII). May act at an RNAP assembly step prior to nuclear import.	DNA-directed RNA polymerase II subunit RPB3.	0.863
GPN1	POLR2M	ENSSSCP00000049779	ENSSSCP00000020059	GPN-loop GTPase; Small GTPase required for proper nuclear import of RNA polymerase II (RNAPII). May act at an RNAP assembly step prior to nuclear import.	RNA polymerase II subunit M.	0.596
GPN1	RPAP1	ENSSSCP00000049779	ENSSSCP00000043917	GPN-loop GTPase; Small GTPase required for proper nuclear import of RNA polymerase II (RNAPII). May act at an RNAP assembly step prior to nuclear import.	RNA polymerase II associated protein 1.	0.604
GPN1	RPAP2	ENSSSCP00000049779	ENSSSCP00000072173	GPN-loop GTPase; Small GTPase required for proper nuclear import of RNA polymerase II (RNAPII). May act at an RNAP assembly step prior to nuclear import.	RNA polymerase II associated protein 2.	0.987
GPN3	GPN1	ENSSSCP00000061970	ENSSSCP00000049779	GPN-loop GTPase 3; Small GTPase required for proper nuclear import of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.	GPN-loop GTPase; Small GTPase required for proper nuclear import of RNA polymerase II (RNAPII). May act at an RNAP assembly step prior to nuclear import.	0.900
GPN3	POLR2C	ENSSSCP00000061970	ENSSSCP00000021748	GPN-loop GTPase 3; Small GTPase required for proper nuclear import of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.	DNA-directed RNA polymerase II subunit RPB3.	0.839
GPN3	POLR2M	ENSSSCP00000061970	ENSSSCP00000020059	GPN-loop GTPase 3; Small GTPase required for proper nuclear import of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.	RNA polymerase II subunit M.	0.487
GPN3	RPAP1	ENSSSCP00000061970	ENSSSCP00000043917	GPN-loop GTPase 3; Small GTPase required for proper nuclear import of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.	RNA polymerase II associated protein 1.	0.646
GPN3	RPAP2	ENSSSCP00000061970	ENSSSCP00000072173	GPN-loop GTPase 3; Small GTPase required for proper nuclear import of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.	RNA polymerase II associated protein 2.	0.951
NDUFAF1	RPAP1	ENSSSCP00000005120	ENSSSCP00000043917	NADH:ubiquinone oxidoreductase complex assembly factor 1.	RNA polymerase II associated protein 1.	0.577
POLR2C	GPN1	ENSSSCP00000021748	ENSSSCP00000049779	DNA-directed RNA polymerase II subunit RPB3.	GPN-loop GTPase; Small GTPase required for proper nuclear import of RNA polymerase II (RNAPII). May act at an RNAP assembly step prior to nuclear import.	0.863
POLR2C	GPN3	ENSSSCP00000021748	ENSSSCP00000061970	DNA-directed RNA polymerase II subunit RPB3.	GPN-loop GTPase 3; Small GTPase required for proper nuclear import of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.	0.839
POLR2C	POLR2M	ENSSSCP00000021748	ENSSSCP00000020059	DNA-directed RNA polymerase II subunit RPB3.	RNA polymerase II subunit M.	0.915
POLR2C	RPAP1	ENSSSCP00000021748	ENSSSCP00000043917	DNA-directed RNA polymerase II subunit RPB3.	RNA polymerase II associated protein 1.	0.538
POLR2C	RPAP2	ENSSSCP00000021748	ENSSSCP00000072173	DNA-directed RNA polymerase II subunit RPB3.	RNA polymerase II associated protein 2.	0.903
POLR2M	GPN1	ENSSSCP00000020059	ENSSSCP00000049779	RNA polymerase II subunit M.	GPN-loop GTPase; Small GTPase required for proper nuclear import of RNA polymerase II (RNAPII). May act at an RNAP assembly step prior to nuclear import.	0.596
POLR2M	GPN3	ENSSSCP00000020059	ENSSSCP00000061970	RNA polymerase II subunit M.	GPN-loop GTPase 3; Small GTPase required for proper nuclear import of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.	0.487
POLR2M	POLR2C	ENSSSCP00000020059	ENSSSCP00000021748	RNA polymerase II subunit M.	DNA-directed RNA polymerase II subunit RPB3.	0.915