STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LHX9LIM homeobox 9. (397 aa)    
Predicted Functional Partners:
POU4F1
POU domain protein.
   
 
 0.731
CBX2
Chromobox protein homolog 2 isoform X1.
      
 0.730
LDB1
LID domain-containing protein.
    
 
 0.728
DBX1
Developing brain homeobox 1.
    
 
 0.728
LDB2
LIM domain binding 2.
    
 
 0.721
FEZF1
FEZ family zinc finger 1.
  
 
 0.650
BSX
Brain specific homeobox.
    
 
 0.614
CABCOCO1
Ciliary-associated calcium-binding coiled-coil protein 1 isoform X1.
      
 0.606
TAF7L
TATA-box binding protein associated factor 7 like.
      
 0.548
BARHL1
BarH like homeobox 1.
   
 
 0.522
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.